Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: test |
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Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: test |
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fasta2taxa-plot
Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open otus and assigns taxa using greengenes. The output are taxa plots. |
https://github.com/MG-RAST/qiime-pipeline.git
Path: CWL/Workflows/qiime/join-reads2plot.cwl Branch/Commit ID: master |
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md5sum-workflow.cwl
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https://github.com/fhembroff/md5sum-checker.git
Path: md5sum/md5sum-workflow.cwl Branch/Commit ID: master |
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ProteinInferenceWorkflow.cwl
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https://github.com/adamscharlotte/CWL-workflow.git
Path: ProteinInferenceWorkflow.cwl Branch/Commit ID: master |
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Trim and reformat reads (single and paired end version)
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https://github.com/EBI-Metagenomics/pipeline-v5.git
Path: workflows/subworkflows/amplicon/trimming-not-empty-subwf.cwl Branch/Commit ID: master |
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bwameth_singlelib_start_with_trimmed.cwl
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https://github.com/ifishlin/Benchmarking_CWL.git
Path: workflows/bwameth/bwameth_singlelib_start_with_trimmed.cwl Branch/Commit ID: main |
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Complex DAG
Non-linear combination of KnowEnG tools |
https://github.com/KnowEnG-Research/cwl-specification.git
Path: code/workflow.cwl Branch/Commit ID: master |
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dfast-filelist-outputdir.cwl
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https://github.com/nigyta/bact_genome.git
Path: cwl/workflow/dfast-filelist-outputdir.cwl Branch/Commit ID: master |
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echo-wf-default.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/echo-wf-default.cwl Branch/Commit ID: main |
