Explore Workflows
View already parsed workflows here or click here to add your own
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kmer_seq_entry_extract_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: 66b5bc323dcd23e1b2c14bf4783babf0f15ca43b |
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PCA - Principal Component Analysis
Principal Component Analysis --------------- Principal component analysis (PCA) is a statistical procedure that uses an orthogonal transformation to convert a set of observations of possibly correlated variables (entities each of which takes on various numerical values) into a set of values of linearly uncorrelated variables called principal components. The calculation is done by a singular value decomposition of the (centered and possibly scaled) data matrix, not by using eigen on the covariance matrix. This is generally the preferred method for numerical accuracy. |
https://github.com/datirium/workflows.git
Path: workflows/pca.cwl Branch/Commit ID: 93b844a80f4008cc973ea9b5efedaff32a343895 |
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gp_makeblastdb
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https://github.com/ncbi/pgap.git
Path: progs/gp_makeblastdb.cwl Branch/Commit ID: 424a01693259a75641dc249d553235aa38a6ce23 |
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Create Genomic Collection for Bacterial Pipeline, ASN.1 input
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https://github.com/ncbi/pgap.git
Path: genomic_source/wf_genomic_source_asn.cwl Branch/Commit ID: 424a01693259a75641dc249d553235aa38a6ce23 |
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Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: 424a01693259a75641dc249d553235aa38a6ce23 |
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PGAP Pipeline
PGAP pipeline for external usage, powered via containers |
https://github.com/ncbi/pgap.git
Path: wf_common.cwl Branch/Commit ID: 424a01693259a75641dc249d553235aa38a6ce23 |
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Seed Search Compartments
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_seed.cwl Branch/Commit ID: 424a01693259a75641dc249d553235aa38a6ce23 |
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tt_univec_wnode.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: 424a01693259a75641dc249d553235aa38a6ce23 |
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Run tRNAScan
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https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: 424a01693259a75641dc249d553235aa38a6ce23 |
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taxonomy_check_16S
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https://github.com/ncbi/pgap.git
Path: task_types/tt_taxonomy_check_16S.cwl Branch/Commit ID: 3bec7182e39cb4af10ed8920639adfa78a28ed81 |
