Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph optional_src_mandatory_sink.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/optional_src_mandatory_sink.cwl

Branch/Commit ID: main
workflow graph bwa_index

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/subworkflows/bwa_index.cwl

Branch/Commit ID: 3bb03c9b
workflow graph vcf_concat.cwl

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/subworkflows/vcf_concat.cwl

Branch/Commit ID: master
workflow graph Salmon quantification, FASTQ -> H5AD count matrix

https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git

Path: salmon-rnaseq/steps/salmon-quantification.cwl

Branch/Commit ID: c338cd3
workflow graph Trim and reformat reads (single and paired end version)

https://github.com/EBI-Metagenomics/pipeline-v5.git

Path: workflows/subworkflows/amplicon/trimming-not-empty-subwf.cwl

Branch/Commit ID: master
workflow graph rRNA_selection.cwl

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: master
workflow graph QIIME2 Step 2 (DADA2 option)

QIIME2 DADA2, feature summaries, phylogenetic diversity tree, taxonomic analysis and ancom

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2.cwl

Branch/Commit ID: qiime2-workflow

Packed ID: main
workflow graph count-lines9-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines9-wf.cwl

Branch/Commit ID: main
workflow graph preprocess_vcf.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: preprocess_vcf.cwl

Branch/Commit ID: develop
workflow graph functional_annotation_raw.cwl

https://github.com/EBI-Metagenomics/pipeline-v5.git

Path: workflows/subworkflows/raw_reads/functional_annotation_raw.cwl

Branch/Commit ID: master