Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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EMG pipeline v3.0 (single end version)
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 3f85843 |
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checker-workflow-wrapping-workflow.cwl
This demonstrates how to wrap a \"real\" tool with a checker workflow that runs both the tool and a tool that performs verification of results |
https://github.com/dockstore-testing/md5sum-checker.git
Path: checker-workflow-wrapping-workflow.cwl Branch/Commit ID: develop |
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cgpRna_workflow.cwl
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https://github.com/cancerit/cgpRna.git
Path: cwls/cgpRna_workflow.cwl Branch/Commit ID: dev |
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transcriptome_assemble.cwl
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https://github.com/yyoshiaki/DAT2-cwl.git
Path: workflow/transcriptome_assemble/transcriptome_assemble.cwl Branch/Commit ID: develop |
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chksum_seqval_wf_interleaved_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_seqval_wf_interleaved_fq.cwl Branch/Commit ID: v0.1.0 |
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tRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: 0746e12 |
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word-mapping-test-files-wf.cwl#word-mapping-wf.cwl
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https://github.com/kbnlresearch/ochre.git
Path: ochre/cwl/word-mapping-test-files-wf.cwl Branch/Commit ID: master Packed ID: word-mapping-wf.cwl |
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EMG assembly for paired end Illumina
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: 708fd97 |
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snapanalysis_setup_and_analyze.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: steps/snapanalysis_setup_and_analyze.cwl Branch/Commit ID: 102d8cb |
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Trim and reformat reads (single and paired end version)
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https://github.com/EBI-Metagenomics/pipeline-v5.git
Path: workflows/subworkflows/amplicon/trim_and_reformat_reads.cwl Branch/Commit ID: master |
