Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Filter ChIP/ATAC peaks for Tag Density Profile or Motif Enrichment analyses Filters ChIP/ATAC peaks with the neatest genes assigned for Tag Density Profile or Motif Enrichment analyses ============================================================================================================ Tool filters output from any ChIP/ATAC pipeline to create a file with regions of interest for Tag Density Profile or Motif Enrichment analyses. Peaks with duplicated coordinates are discarded.	https://github.com/datirium/workflows.git Path: workflows/filter-peaks-for-heatmap.cwl Branch/Commit ID: 7ae3b75bbe614e59cdeaba06047234a6c40c0fe9
	Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: 2f65fc96207a71b1cda4e246f808bed056608cd0
	Chunked version of phmmer-v3.2.cwl	https://github.com/EBI-Metagenomics/workflow-is-cwl.git Path: workflows/phmmer-v3.2-chunked-wf.cwl Branch/Commit ID: 72f702591368397f56d455128f60916902104dd2
	kmer_build_tree	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: 122aba2dafbb63241413c82b725b877c04523aaf
	sum-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/sum-wf.cwl Branch/Commit ID: f207d168f4e7eb4dd2279840d4062ba75d9c79c3
	Prepare user input Prepare user input for NCBI-PGAP pipeline	https://github.com/ncbi/pgap.git Path: prepare_user_input2.cwl Branch/Commit ID: 1e16653514fd5629a704516eb447043c9fd0a53b
	RNA-Seq alignment and transcript/gene abundance workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/rnaseq.cwl Branch/Commit ID: e2a34d2b8c406db9aed8e49e8bdcf36f51444379
	kmer_build_tree	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: 16e3915d2a357e2a861b30911c832e5ddc0c1784
	mut.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/mut.cwl Branch/Commit ID: 2a8af96d334e6979cb00af4569581d192d43ce41
	Single-cell WNN Cluster Analysis Single-cell WNN Cluster Analysis Clusters multiome ATAC and RNA-Seq datasets, identifies gene markers and differentially accessible peaks.	https://github.com/datirium/workflows.git Path: workflows/sc-wnn-cluster.cwl Branch/Commit ID: 22880e0f41d0420a17d643e8a6e8ee18165bbfbf