Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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chipseq-header.cwl
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https://github.com/datirium/workflows.git
Path: metadata/chipseq-header.cwl Branch/Commit ID: b4d578c2ba4713a5a22163d9f8c7105acda1f22e |
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Run genomic CMsearch (Rfam rRNA)
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https://github.com/ncbi/pgap.git
Path: bacterial_ncrna/wf_gcmsearch.cwl Branch/Commit ID: 1e16653514fd5629a704516eb447043c9fd0a53b |
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Build Bowtie indices
Workflow runs [Bowtie](http://bowtie-bio.sourceforge.net/tutorial.shtml) v1.2.0 (12/30/2016) to build indices for reference genome provided in a single FASTA file as fasta_file input. Generated indices are saved in a folder with the name that corresponds to the input genome |
https://github.com/datirium/workflows.git
Path: workflows/bowtie-index.cwl Branch/Commit ID: b4d578c2ba4713a5a22163d9f8c7105acda1f22e |
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Single-Cell RNA-Seq Trajectory Analysis
Single-Cell RNA-Seq Trajectory Analysis Infers developmental trajectories and pseudotime from cells clustered by similarity of gene expression data. |
https://github.com/datirium/workflows.git
Path: workflows/sc-rna-trajectory.cwl Branch/Commit ID: b4d578c2ba4713a5a22163d9f8c7105acda1f22e |
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genome-kallisto-index.cwl
Generates a FASTA file with the DNA sequences for all transcripts in a GFF file and builds kallisto index |
https://github.com/Barski-lab/workflows.git
Path: tools/genome-kallisto-index.cwl Branch/Commit ID: 9a03dbe8829ca649814d9c8bd11fe3a673750a95 |
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bact_get_kmer_reference
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https://github.com/ncbi/pgap.git
Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: 1e16653514fd5629a704516eb447043c9fd0a53b |
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Execute CRISPR
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https://github.com/ncbi/pgap.git
Path: bacterial_mobile_elem/wf_bacterial_mobile_elem.cwl Branch/Commit ID: 1e16653514fd5629a704516eb447043c9fd0a53b |
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spurious_annot pass2
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https://github.com/ncbi/pgap.git
Path: spurious_annot/wf_spurious_annot_pass2.cwl Branch/Commit ID: 1e16653514fd5629a704516eb447043c9fd0a53b |
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Align reference proteins plane complete workflow, with miniprot
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_protein_alignment_miniprot.cwl Branch/Commit ID: 1e16653514fd5629a704516eb447043c9fd0a53b |
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Seed Protein Alignments
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_seed_seqids.cwl Branch/Commit ID: 1e16653514fd5629a704516eb447043c9fd0a53b |
