Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
scRNA-seq pipeline using Salmon and Alevin
|
https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: pipeline.cwl Branch/Commit ID: ce04e2c |
|
|
|
rRNA_selection.cwl
|
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: 3168316 |
|
|
|
scRNA-seq pipeline using Salmon and Alevin
|
https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: pipeline.cwl Branch/Commit ID: b9c8e26 |
|
|
|
qiime2 diversity analyses
Alpha and beta diversity analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step3-alpha-analysis.cwl Branch/Commit ID: qiime2-workflow Packed ID: qiime2-06-alpha-beta-diversity.cwl |
|
|
|
cnv.cwl
Copynumber variation workflow, runs ADTEx and Varscan |
https://github.com/BD2KGenomics/dockstore_workflow_cnv.git
Path: cnv.cwl Branch/Commit ID: v1.0.0 |
|
|
|
gk-run-qeheat-snapshot.cwl
|
https://github.com/vdikan/cwl-gk-thermal.git
Path: cwl/gk-run-qeheat-snapshot.cwl Branch/Commit ID: master |
|
|
|
SSU-from-tablehits.cwl
|
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: d3b8e45 |
|
|
|
SSU-from-tablehits.cwl
|
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: f6b5196 |
|
|
|
oxog_varbam_annotate_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/icgc-tcga-pancancer/oxog-dockstore-tools.git
Path: oxog_varbam_annotate_wf.cwl Branch/Commit ID: 1.0.0 |
|
|
|
wgs alignment and germline variant detection
|
https://github.com/fgomez02/analysis-workflows.git
Path: definitions/pipelines/germline_wgs.cwl Branch/Commit ID: No_filters_detect_variants |
