Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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STAR-Alignment-PE-circRNA
This workflow aligns the fastq files using STAR for paired-end samples to be used in circRNA pipeline |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/Alignments/star-alignment-circRNA.cwl Branch/Commit ID: master |
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cnv_codex
CNV CODEX calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/cnv_codex.cwl Branch/Commit ID: 3bb03c9b |
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Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: downsample_and_recall |
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Salmon quantification, FASTQ -> H5AD count matrix
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https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git
Path: salmon-rnaseq/steps/salmon-quantification.cwl Branch/Commit ID: 999afe5 |
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WES Preprocessing
Whole Exome Sequence analysis Preprocessing |
https://github.com/Duke-GCB/bespin-cwl.git
Path: workflows/exomeseq-preprocessing.cwl Branch/Commit ID: master |
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RNA-Seq alignment and transcript/gene abundance workflow
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/rnaseq.cwl Branch/Commit ID: downsample_and_recall |
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qc-basic.workflow.cwl
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https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/qc-basic.workflow.cwl Branch/Commit ID: master |
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rna annotation
RNAs - predict, cluster, identify, annotate |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/rna-annotation.workflow.cwl Branch/Commit ID: master |
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Detect Variants workflow
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/detect_variants_mouse.cwl Branch/Commit ID: downsample_and_recall |
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rRNA_selection.cwl
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: master |
