Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	bam to trimmed fastqs and HISAT alignments	https://github.com/tmooney/cancer-genomics-workflow.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985
	merge and annotate svs with population allele freq and vep	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: e2a34d2b8c406db9aed8e49e8bdcf36f51444379
	SV filtering workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/filter_sv_vcf.cwl Branch/Commit ID: e2a34d2b8c406db9aed8e49e8bdcf36f51444379
	Filter Protein Seeds; Find ProSplign Alignments	https://github.com/ncbi/pgap.git Path: protein_alignment/wf_compart_filter_prosplign.cwl Branch/Commit ID: 4b73bfeb967ee9f57a0410276f7c39e784f0846f
	Seed Protein Alignments	https://github.com/ncbi/pgap.git Path: protein_alignment/wf_seed_1.cwl Branch/Commit ID: 4b73bfeb967ee9f57a0410276f7c39e784f0846f
	bacterial_orthology	https://github.com/ncbi/pgap.git Path: bacterial_orthology/wf_bacterial_orthology.cwl Branch/Commit ID: 4b73bfeb967ee9f57a0410276f7c39e784f0846f
	trnascan_wnode and gpx_qdump combined	https://github.com/ncbi/pgap.git Path: bacterial_trna/wf_scan_and_dump.cwl Branch/Commit ID: 4b73bfeb967ee9f57a0410276f7c39e784f0846f
	Subworkflow that runs cnvkit in single sample mode and returns a vcf file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: e2a34d2b8c406db9aed8e49e8bdcf36f51444379
	Run genomic CMsearch	https://github.com/ncbi/pgap.git Path: bacterial_noncoding/wf_gcmsearch.cwl Branch/Commit ID: 4b73bfeb967ee9f57a0410276f7c39e784f0846f
	protein_extract	https://github.com/ncbi/pgap.git Path: progs/protein_extract.cwl Branch/Commit ID: 4b73bfeb967ee9f57a0410276f7c39e784f0846f