Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph gatk-4.0.0.0-genomics-db-and-genotypegvcfs-per-interval.cwl

https://github.com/wtsi-hgi/arvados-pipelines.git

Path: cwl/workflows/gatk-4.0.0.0-genomics-db-and-genotypegvcfs-per-interval.cwl

Branch/Commit ID: master
workflow graph cond-wf-010_nojs.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/conditionals/cond-wf-010_nojs.cwl

Branch/Commit ID: main
workflow graph cond-wf-006_nojs.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/conditionals/cond-wf-006_nojs.cwl

Branch/Commit ID: main
workflow graph cond-wf-011.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/conditionals/cond-wf-011.cwl

Branch/Commit ID: main
workflow graph SSU-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: c1f8b22
workflow graph somatic_exome: exome alignment and somatic variant detection

somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/somatic_exome.cwl

Branch/Commit ID: downsample_and_recall
workflow graph bqsr-flow-distr.cwl

Run BQSR pre+post+plot flow with distribution

 https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/bqsr-flow-distr.cwl

Branch/Commit ID: master
workflow graph cond-wf-004.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/conditionals/cond-wf-004.cwl

Branch/Commit ID: main
workflow graph cond-wf-013.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/conditionals/cond-wf-013.cwl

Branch/Commit ID: main
workflow graph alignment_workflow_md5checker.cwl

https://github.com/databiosphere/topmed-workflows.git

Path: aligner/topmed-cwl/workflow/alignment_workflow_md5checker.cwl

Branch/Commit ID: 1.32.0