Explore Workflows

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: 43d2fb8

The BD Rhapsody™ assays are used to create sequencing libraries from single cell transcriptomes. After sequencing, the analysis pipeline takes the FASTQ files and a reference file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file.

https://github.com/longbow0/cwl.git

Path: v1.9-beta/rhapsody_targeted_1.9-beta.cwl

Branch/Commit ID: master

Packed ID: main

Common Workflow Language example that illustrate the process of setting up a simulation system containing a protein, step by step, using the BioExcel Building Blocks library (biobb). The particular example used is the Lysozyme protein (PDB code 1AKI).

https://github.com/bioexcel/biobb_wf_cwl_tutorial.git

Path: biobb_wf_cwl_tutorial/examples/BioExcel-CWL-MDSetup.cwl

Branch/Commit ID: master

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-assembly.cwl

Branch/Commit ID: 9c57dba

https://github.com/chenlab-sj/M2A.git

Path: cwl/m2a.cwl

Branch/Commit ID: master

https://github.com/mskcc/pluto-cwl.git

Path: cwl/samples_fillout_workflow.cwl

Branch/Commit ID: master

https://github.com/MgCoders/of-public.git

Path: 1st-workflow-generated.cwl

Branch/Commit ID: master

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git

Path: preprocess_vcf.cwl

Branch/Commit ID: master

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-assembly.cwl

Branch/Commit ID: d3b8e45

run diamond on mutlple DBs and merge-sort results

https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/protein-diamond.workflow.cwl

Branch/Commit ID: master