Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	example.cwl Example CWL workflow that uses some advanced features	https://github.com/mskcc/pluto-cwl.git Path: cwl/example.cwl Branch/Commit ID: dbff0c5ae06a8b21ec70bc8279f32bce151cbfc2
	bacterial_screening.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/bacterial_screening.cwl Branch/Commit ID: a1f39f21670be28427ceb91ceaeb9339545c18fc
	joint genotyping for trios or small cohorts	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/joint_genotype.cwl Branch/Commit ID: 31a179d7a2f2ac86bfd7fcc4dc79832c3739ae76
	somatic_exome: exome alignment and somatic variant detection somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: 480c438a6a7e78c624712aec01bc4214d2bc179c
	Detect Variants workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/detect_variants_mouse.cwl Branch/Commit ID: 4ae14dd3a447c90022e3dfeb53fc05b8436e2775
	annotate.cwl	https://github.com/hubmapconsortium/hra-workflows.git Path: steps/annotate.cwl Branch/Commit ID: 092373445cddc0799ce3ba15c9b609e2df86552f
	Dockstore.cwl	https://github.com/kathy-t/ghapps-single-workflow.git Path: Dockstore.cwl Branch/Commit ID: 2ba9f641ee82d93f19c3e5e04b3bbdea5de406b3
	predictions.cwl	https://github.com/simleo/workflow-run-crate.git Path: docs/examples/draft/ml-predict-pipeline-streamflow/predictions.cwl Branch/Commit ID: ac8a829144ad496c08fc3b0eb41cd64848c41582
	Seed Protein Alignments	https://github.com/ncbi/pgap.git Path: protein_alignment/wf_seed_seqids.cwl Branch/Commit ID: a1f39f21670be28427ceb91ceaeb9339545c18fc
	Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_orf_hmms.cwl Branch/Commit ID: 8c21035bff3cbffccf5682bd0357a6d71f3bdb81