Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)

https://github.com/hmenager/workflow-is-cwl.git

Path: workflows/TransDecoder-v5-wf-2steps.cwl

Branch/Commit ID: master
workflow graph bqsr-distr.cwl

https://github.com/sentieon/sentieon-cwl.git

Path: stage/bqsr-distr.cwl

Branch/Commit ID: master
workflow graph make_final_outputs_workflow.cwl

https://github.com/NCI-GDC/gdc-rnaseq-cwl.git

Path: rnaseq-star-align/subworkflows/rnaseq_processing/make_final_outputs_workflow.cwl

Branch/Commit ID: master
workflow graph workflow_i2g.cwl

local

 https://github.com/aplbrain/saber.git

Path: demos/em_pipelines/workflow_i2g.cwl

Branch/Commit ID: master
workflow graph samtools_view_sam2bam

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/samtools_view_sam2bam.cwl

Branch/Commit ID: 1.0.5
workflow graph Single-cell Multiome ATAC and RNA-Seq Alignment

Single-cell Multiome ATAC and RNA-Seq Alignment Runs Cell Ranger ARC Count to quantifies chromatin accessibility and gene expression from a single-cell Multiome ATAC and RNA-Seq library

 https://github.com/Barski-lab/sc-seq-analysis.git

Path: workflows/sc-multiome-align-wf.cwl

Branch/Commit ID: main
workflow graph bwa_mem

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/bwa_mem.cwl

Branch/Commit ID: 1.0.5
workflow graph count-lines12-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines12-wf.cwl

Branch/Commit ID: main
workflow graph 1st-workflow.cwl

https://github.com/golharam/cwl-graph-generate.git

Path: test/1st-workflow.cwl

Branch/Commit ID: master
workflow graph align_and_count.cwl

https://github.com/common-workflow-lab/wdl-cwl-translator.git

Path: wdl2cwl/tests/cwl_files/align_and_count.cwl

Branch/Commit ID: main