Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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biscuit_trim_align_dedup_sort_merge.cwl
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https://github.com/CompEpigen/PipelineOlympics.git
Path: CWL/workflows/Biscuit/tools/biscuit_trim_align_dedup_sort_merge.cwl Branch/Commit ID: main |
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rhapsody_pipeline_2.0.cwl#VDJ_Analyze_Reads_IG.cwl
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https://github.com/Chi-CRL/cwl_check_workflow.git
Path: rhapsody_pipeline_2.0.cwl Branch/Commit ID: main Packed ID: VDJ_Analyze_Reads_IG.cwl |
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count-lines14-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines14-wf.cwl Branch/Commit ID: master |
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pcawg_oxog_wf.cwl
This workflow will perform OxoG filtering on a set of VCFs. It will produce VCFs and their associated index files. |
https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git
Path: pcawg_oxog_wf.cwl Branch/Commit ID: develop |
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rnaediting2strands.workflow.cwl
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https://github.com/YeoLab/sailor.git
Path: cwl/rnaediting2strands.workflow.cwl Branch/Commit ID: master |
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qiime2 DADA2 detect/correct sequence data
Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: qiime2-workflow Packed ID: qiime2-03-dada2.cwl |
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split_bam_workflow.cwl
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https://github.com/nci-gdc/htseq-cwl.git
Path: workflows/subworkflows/split_bam_workflow.cwl Branch/Commit ID: master |
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EMG pipeline v4.0 (single end version)
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https://github.com/FarahZKhan/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v4-single.cwl Branch/Commit ID: master |
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wf-variantcall.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: wes-agha-test/wes_chr21_test-workflow-arvados/wf-variantcall.cwl Branch/Commit ID: master |
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kf_alignment_fq_input_wf.cwl
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https://github.com/cr-ste-justine/chujs-alignment-workflow.git
Path: workflows/kf_alignment_fq_input_wf.cwl Branch/Commit ID: dev |
