Explore Workflows
View already parsed workflows here or click here to add your own
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SetMirrorPanelAlignment
Derive mirror panel alignment parameters from measurements of the optical point-spread functions. |
https://github.com/gammasim/workflows.git
Path: workflows/SetMirrorPanelAlignment.cwl Branch/Commit ID: bf4d4a44a543bcc04f4508ce020751c71550acf5 |
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gcaccess_from_list
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https://github.com/ncbi/pgap.git
Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: c64599f5db2437f9323d41cc3d8d9efb20a2667e |
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cluster_blastp_wnode and gpx_qdump combined
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https://github.com/ncbi/pgap.git
Path: task_types/tt_cluster_and_qdump.cwl Branch/Commit ID: c64599f5db2437f9323d41cc3d8d9efb20a2667e |
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trim-rnaseq-se-dutp.cwl
Runs RNA-Seq dUTP BioWardrobe basic analysis with strand specific single-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/trim-rnaseq-se-dutp.cwl Branch/Commit ID: de847468843203ce92b6d19323c5fe77dc488e34 |
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WF6101.cwl
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https://github.com/Marco-Salvi/dtc61.git
Path: WF6101.cwl Branch/Commit ID: f435de822bbe32648738934700d340ba29dea215 |
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bact_get_kmer_reference
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https://github.com/ncbi/pgap.git
Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: c64599f5db2437f9323d41cc3d8d9efb20a2667e |
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Filter Protein Seeds; Find ProSplign Alignments
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_compart_filter_prosplign.cwl Branch/Commit ID: c64599f5db2437f9323d41cc3d8d9efb20a2667e |
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record-output-wf_v1_0.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/record-output-wf_v1_0.cwl Branch/Commit ID: 5759b4275906e6cfe13912c8426de2a2237cb4b0 |
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bacterial_kmer
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https://github.com/ncbi/pgap.git
Path: bacterial_kmer/wf_bacterial_kmer.cwl Branch/Commit ID: a34f47d1e37af51e387ecdfa5c3047f106c1146b |
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bam-bedgraph-bigwig.cwl
Workflow converts input BAM file into bigWig and bedGraph files. Input BAM file should be sorted by coordinates (required by `bam_to_bedgraph` step). If `split` input is not provided use true by default. Default logic is implemented in `valueFrom` field of `split` input inside `bam_to_bedgraph` step to avoid possible bug in cwltool with setting default values for workflow inputs. `scale` has higher priority over the `mapped_reads_number`. The last one is used to calculate `-scale` parameter for `bedtools genomecov` (step `bam_to_bedgraph`) only in a case when input `scale` is not provided. All logic is implemented inside `bedtools-genomecov.cwl`. `bigwig_filename` defines the output name only for generated bigWig file. `bedgraph_filename` defines the output name for generated bedGraph file and can influence on generated bigWig filename in case when `bigwig_filename` is not provided. All workflow inputs and outputs don't have `format` field to avoid format incompatibility errors when workflow is used as subworkflow. |
https://github.com/Barski-lab/workflows.git
Path: tools/bam-bedgraph-bigwig.cwl Branch/Commit ID: c4759ed88dcd40e96067685a345488414b6f88fb |
