Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph wgs alignment with qc

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/pipelines/wgs_alignment.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph sidearm.cwl

https://github.com/NCBI-Hackathons/Virus_Detection_SRA.git

Path: cwl/tools/sidearm.cwl

Branch/Commit ID: master
workflow graph nmrpipe_workflow.cwl

https://github.com/andreagia/CWL_dem1_NMR_Peak_Picking.git

Path: nmrpipe_workflow.cwl

Branch/Commit ID: master
workflow graph return-output-file.cwl#main

https://github.com/cwl-for-eo/cwl-how-to.git

Path: 01-output/return-output-file.cwl

Branch/Commit ID: master

Packed ID: main
workflow graph wf_fastqc.cwl

This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol)

https://github.com/yeolab/eclip.git

Path: cwl/wf_fastqc.cwl

Branch/Commit ID: master
workflow graph transform.cwl

https://github.com/denis-yuen/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/transform.cwl

Branch/Commit ID: master
workflow graph wf_get_reproducible_eclip_peaks.cwl

The main workflow that produces two reproducible peaks via IDR given two eCLIP samples (1 input, 1 IP each).

https://github.com/YeoLab/merge_peaks.git

Path: cwl/wf_get_reproducible_eclip_peaks.cwl

Branch/Commit ID: master
workflow graph wgs alignment with qc

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/alignment_wgs.cwl

Branch/Commit ID: low-vaf
workflow graph io-int-default-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/io-int-default-wf.cwl

Branch/Commit ID: main
workflow graph rnaediting2strands.workflow.cwl

https://github.com/YeoLab/sailor.git

Path: cwl/rnaediting2strands.workflow.cwl

Branch/Commit ID: master