Explore Workflows

For a given Zenodo community, list file content of its downloadable *.zip files

https://github.com/stain/ro-index-paper.git

Path: code/data-gathering/workflows/zenodo-zip-content.cwl

Branch/Commit ID: master

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git

Path: pcawg_annotate_wf.cwl

Branch/Commit ID: develop

This demonstrates how to wrap a \"real\" tool with a checker workflow that runs both the tool and a tool that performs verification of results

https://github.com/dockstore-testing/md5sum-checker.git

Path: checker-workflow-wrapping-workflow.cwl

Branch/Commit ID: develop

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_xam_to_interleaved_fq.cwl

Branch/Commit ID: 0.5.0_test

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 3b602cb

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/low_vaf_detect_variants.cwl

Branch/Commit ID: low-vaf

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 3168316

https://github.com/nigyta/rice_reseq.git

Path: workflows/fastq2bam.cwl

Branch/Commit ID: master

https://github.com/idaks/cwl_modeling.git

Path: yw_cwl_modeling/yw_cwl_parser_old/Examples/calculate_models/wf_calculate_models_1.cwl

Branch/Commit ID: master

Water bodies detection based on NDWI and otsu threshold applied to a single Sentinel-2 COG STAC item

https://github.com/eoap/quickwin.git

Path: cwl-workflow/app-water-body-cloud-native.cwl

Branch/Commit ID: main

Packed ID: main