Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	exome alignment with qc, no bqsr, no verify_bam_id	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_exome_mouse.cwl Branch/Commit ID: 22fce2dbdada0c4135b6f0677f78535cf980cb07
	sum-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/sum-wf.cwl Branch/Commit ID: 4700fbee9a5a3271eef8bc9ee595619d0720431b
	trimmed_fastq Quality Control and Raw Data trimming	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/trimmed_fastq.cwl Branch/Commit ID: 637e294ff72687314faacef2c30cb46874611e50
	AltAnalyze Iterative Clustering and Guide-gene Selection Devel version of AltAnalyze Iterative Clustering and Guide-gene Selection =========================================================================	https://github.com/datirium/workflows.git Path: workflows/altanalyze-icgs.cwl Branch/Commit ID: 5561f7ee11dd74848680351411a19aa87b13d27b
	scatter-wf4.cwl#main	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/scatter-wf4.cwl Branch/Commit ID: 886a6ac41c685f20d39e352f9c657e59f3312265 Packed ID: main
	Feature expression merge - combines feature expression from several experiments Feature expression merge - combines feature expression from several experiments ========================================================================= Workflows merges RPKM (by default) gene expression from several experiments based on the values from GeneId, Chrom, TxStart, TxEnd and Strand columns (by default). Reported unique columns are renamed based on the experiments names.	https://github.com/datirium/workflows.git Path: workflows/feature-merge.cwl Branch/Commit ID: 12e5256de1b680c551c87fd5db6f3bc65428af67
	record-in-secondaryFiles-wf.cwl	https://github.com/common-workflow-language/cwl-v1.2.git Path: tests/record-in-secondaryFiles-wf.cwl Branch/Commit ID: 31ec48a8d81ef7c1b2c5e9c0a19e7623efe4a1e2
	kfdrc_process_bam.cwl	https://github.com/kids-first/kf-alignment-workflow.git Path: subworkflows/kfdrc_process_bam.cwl Branch/Commit ID: 47e3dadcbdb6a07acaf74cdfb91554aabe5e4b24
	indices-header.cwl	https://github.com/datirium/workflows.git Path: metadata/indices-header.cwl Branch/Commit ID: 667280228c27c475969c6a331d26e0cf2337d677
	phase VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/phase_vcf.cwl Branch/Commit ID: e649fcb1092905c539be026a3f23c82d5b0871d2