Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph A workflow that aligns a fasta file and provides statistics on the SAM file

A workflow that aligns a fasta file and provides statistics on the SAM file

 https://github.com/dockstore/bcc2020-training.git

Path: cwl-training/exercise3/solution/align_and_metrics_imports.cwl

Branch/Commit ID: master
workflow graph EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/emg-qc-single.cwl

Branch/Commit ID: master
workflow graph calculate_contamination_workflow.cwl

GATK4.1.2 Calculate tumor-normal contamination workflow

https://github.com/NCI-GDC/gatk4_mutect2_cwl.git

Path: subworkflows/calculate_contamination_workflow.cwl

Branch/Commit ID: master
workflow graph SetPhotonDelay

Derive additional delay of photon arrival times at the photodetectors.

 https://github.com/gammasim/workflows.git

Path: workflows/SetPhotonDelay.cwl

Branch/Commit ID: main
workflow graph Running cellranger count and lineage inference

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/single_cell_rnaseq.cwl

Branch/Commit ID: low-vaf
workflow graph cmsearch-multimodel.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/cmsearch-multimodel.cwl

Branch/Commit ID: c1f8b22
workflow graph Detect DoCM variants

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/docm_germline.cwl

Branch/Commit ID: low-vaf
workflow graph 5S-from-tablehits.cwl

https://github.com/farahzkhan/ebi-metagenomics-cwl.git

Path: tools/5S-from-tablehits.cwl

Branch/Commit ID: master
workflow graph adapter for sequence_align_and_tag

Some workflow engines won't stage files in our nested structure, so parse it out here

 https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl

Branch/Commit ID: master
workflow graph Non-Coding Bacterial Genes

https://github.com/slottad/pgap.git

Path: bacterial_noncoding/wf_bacterial_noncoding.cwl

Branch/Commit ID: master