Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Subworkflow to allow calling cnvkit with cram instead of bam files	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: 6f9f8a2057c6a9f221a44559f671e87a75c70075
	kmer_cache_retrieve	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: 205f4ceb47ba7537a6923d2dfb03668317c2fd89
	dynresreq-workflow.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/dynresreq-workflow.cwl Branch/Commit ID: 1eb6bfe3c77aebaf69453a669d21ae7a5a78056f
	format_rrnas_from_seq_entry	https://github.com/ncbi/pgap.git Path: task_types/tt_format_rrnas_from_seq_entry.cwl Branch/Commit ID: a7fced3ed8c839272c8f3a8db9da7bc8cd50271f
	record-output-wf_v1_1.cwl	https://github.com/common-workflow-language/cwl-utils.git Path: testdata/record-output-wf_v1_1.cwl Branch/Commit ID: 8058c7477097f90205dd7d8481781eb3737ea9c9
	SoupX (workflow) - an R package for the estimation and removal of cell free mRNA contamination Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs.	https://github.com/datirium/workflows.git Path: tools/soupx-subworkflow.cwl Branch/Commit ID: c6bfa0de917efb536dd385624fc7702e6748e61d
	Immunotherapy Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/immuno.cwl Branch/Commit ID: 42c66dd24ce5026d3f717214ddb18b7b4fae93cf
	bam to trimmed fastqs and biscuit alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: c6bbd4cdd612b3b5cc6e9000df4800c21e192bf5
	trick_revsort.cwl Reverse the lines in a document, then sort those lines.	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/trick_revsort.cwl Branch/Commit ID: e6a1e1f3a3b3168028bd19aaf465826fa276a35b
	Create Genomic Collection for Bacterial Pipeline	https://github.com/ncbi/pgap.git Path: genomic_source/wf_genomic_source.cwl Branch/Commit ID: 1bf7dc7b03ea3c64e54375cc5c3767849a801000