Explore Workflows

https://github.com/ncbi/pgap.git

Path: bacterial_ncrna/wf_gcmsearch.cwl

Branch/Commit ID: dev

https://github.com/ncbi/pgap.git

Path: checkm/wf_checkm.cwl

Branch/Commit ID: dev

https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git

Path: wf.cwl

Branch/Commit ID: main

Packed ID: VDJ_Assemble_and_Annotate_Contigs_TCR.cwl

https://github.com/ljdursi/cwl-tutorial.git

Path: cl-tools/workflow/basic.cwl

Branch/Commit ID: master

Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using GATK4. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence.

https://github.com/leipzig/2020-covid-19-bh.git

Path: Ambarish_Kumar_SOP/CWL/Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl

Branch/Commit ID: main

Parallel InSAR coherence workflow: 1. Generate InSAR pairs from input date range and burst parameters 2. Process each pair in parallel (scatter) 2. STAC results (removed for now)

https://github.com/jzvolensky/s1-workflows.git

Path: cwl/sar_coherence_parallel_test.cwl

Branch/Commit ID: coherence_parallel_refactor

Packed ID: main

This workflow uses MEME suite for motif finding

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/ChIP-Seq/meme-motif.cwl

Branch/Commit ID: master

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/alignment_umi_molecular.cwl

Branch/Commit ID: downsample_and_recall

https://github.com/Marco-Salvi/cwl-test.git

Path: wf5201/ST520111.cwl

Branch/Commit ID: main

https://github.com/Marco-Salvi/cwl-test.git

Path: wf5201/ST520117.cwl

Branch/Commit ID: main