Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph zip_and_index_vcf.cwl

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: 1.0.0
workflow graph Salmon quantification, FASTQ -> H5AD count matrix

https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git

Path: salmon-rnaseq/steps/salmon-quantification.cwl

Branch/Commit ID: c338cd3
workflow graph Transcriptome assembly workflow

https://github.com/stain/workflow-is-cwl.git

Path: workflows/TranscriptomeAssembly-wf.cwl

Branch/Commit ID: avoid-spaces
workflow graph inp_update_wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/inp_update_wf.cwl

Branch/Commit ID: master
workflow graph WGS QC workflow

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/qc_wgs.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph cond-wf-005.1.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/cond-wf-005.1.cwl

Branch/Commit ID: main
workflow graph wf_YW2CWL_parser.cwl

https://github.com/idaks/cwl_modeling.git

Path: yw_cwl_modeling/yw2cwl_parser/example_sql/YW2CWL_parser/wf_YW2CWL_parser.cwl

Branch/Commit ID: master
workflow graph step-valuefrom-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/step-valuefrom-wf.cwl

Branch/Commit ID: main
workflow graph exome alignment and germline variant detection

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/germline_detect_variants.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph 03-map-pe.cwl

STARR-seq 03 mapping - reads: PE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/STARR-seq_pipeline/03-map-pe.cwl

Branch/Commit ID: master