Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph basic.cwl

https://github.com/ljdursi/cwl-tutorial.git

Path: cl-tools/workflow/basic.cwl

Branch/Commit ID: master
workflow graph cnv_gridss

CNV GRIDSS calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/cnv_gridss.cwl

Branch/Commit ID: 1.0.6
workflow graph cnv_manta

CNV Manta calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/cnv_manta.cwl

Branch/Commit ID: 1.0.6
workflow graph wgs alignment and somatic variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_wgs_nonhuman.cwl

Branch/Commit ID: master
workflow graph topmed-alignment-checker.cwl

https://github.com/stain/topmed-workflows.git

Path: aligner/sbg-alignment-cwl/topmed-alignment-checker.cwl

Branch/Commit ID: no-id
workflow graph workflow.cwl

https://github.com/fstrozzi/scalability-reproducibility-chapter.git

Path: CWL/workflow.cwl

Branch/Commit ID: master
workflow graph wf_input_norm_and_entropy.cwl

This workflow normalizes clip aligned reads against a size-matched input sample. Then, an entropy score is calculated for each peak found.

https://github.com/YeoLab/merge_peaks.git

Path: cwl/wf_input_norm_and_entropy.cwl

Branch/Commit ID: master
workflow graph fp_filter workflow

https://github.com/ChrisMaherLab/PACT.git

Path: subworkflows/fp_filter.cwl

Branch/Commit ID: master
workflow graph steps.cwl

https://github.com/DimitraPanou/scRNAseq-cwl.git

Path: steps.cwl

Branch/Commit ID: master
workflow graph FASTQ Vector Removal

This workflow clean up vectros from fastq files

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Contamination/fastq-vector-removal.cwl

Branch/Commit ID: master