Explore Workflows

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/snapanalysis_setup_and_analyze.cwl

Branch/Commit ID: 102d8cb

Modified from https://github.com/kids-first/kf-somatic-workflow/blob/master/sub_workflows/prepare_reference.cwl

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/bwa_index.cwl

Branch/Commit ID: master

Sub workflow used in the Animal Genome Assembly pipeline by Kazuharu Arakawa (@gaou_ak), CWLized by Tazro Ohta (@inutano)

https://github.com/pitagora-network/DAT2-cwl.git

Path: workflow/animal-genome-assembly/hybrid_error_correction.cwl

Branch/Commit ID: main

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/module-3.cwl

Branch/Commit ID: master

https://github.com/mskcc/roslin-cwl.git

Path: modules/pair/collect_pair_files.cwl

Branch/Commit ID: master

Retrieve and process the PDB structures corresponding to the CATH superfamily ids resulting in a list of residue-mapped structural domain instances along with lost structural instances (requires Data/cath_domain_description_file.txt downloaded from CATH and uses SIFTS resource for PDB to UniProt residue Mapping)

https://gitlab.inria.fr/capsid.public_codes/CroMaSt.git

Path: Tools/resmapping_cath_instances_subwf.cwl

Branch/Commit ID: main

https://github.com/DataBiosphere/topmed-workflows.git

Path: aligner/sbg-alignment-cwl/topmed-alignment-checker.cwl

Branch/Commit ID: 1.32.0

Counts words of a message via echo and wc

https://github.com/NLeSC/scriptcwl.git

Path: tests/data/workflows/echo-wc.cwl

Branch/Commit ID: master

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/samtools_sort.cwl

Branch/Commit ID: 1.0.6

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/waltz/waltz-workflow.cwl

Branch/Commit ID: master