Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph snapanalysis_setup_and_analyze.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/snapanalysis_setup_and_analyze.cwl

Branch/Commit ID: 302f1f3
workflow graph cnv_gridss

CNV GRIDSS calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/cnv_gridss.cwl

Branch/Commit ID: 1.0.6
workflow graph grep-and-count.cwl

https://github.com/MarkRobbo/workflows.git

Path: workflows/presentation-demo/grep-and-count.cwl

Branch/Commit ID: master
workflow graph bqsr-distr.cwl

https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/bqsr-distr.cwl

Branch/Commit ID: master
workflow graph dynresreq-workflow-stepdefault.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/dynresreq-workflow-stepdefault.cwl

Branch/Commit ID: master
workflow graph exome alignment and somatic variant detection for cle purpose

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/somatic_exome_cle.cwl

Branch/Commit ID: low-vaf
workflow graph SPRM pipeline

https://github.com/hubmapconsortium/sprm.git

Path: pipeline.cwl

Branch/Commit ID: 0cb2efa
workflow graph qiime2 Deblur detect/correct sequence data

Option 2: Deblur from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-deblur.cwl

Branch/Commit ID: qiime2-workflow

Packed ID: qiime2-03-deblur.cwl
workflow graph ST520116.cwl

https://github.com/Marco-Salvi/cwl-test.git

Path: wf5201/ST520116.cwl

Branch/Commit ID: main
workflow graph wgs alignment and germline variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/germline_wgs_gvcf.cwl

Branch/Commit ID: master