Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph fastq2fasta.cwl

https://github.com/arvados/bh20-seq-resource.git

Path: workflows/fastq2fasta/fastq2fasta.cwl

Branch/Commit ID: master
workflow graph Dockstore.cwl

https://github.com/briandoconnor/dockstore-workflow-md5sum.git

Path: Dockstore.cwl

Branch/Commit ID: master
workflow graph freebayes.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/variant_calling/freebayes.cwl

Branch/Commit ID: master
workflow graph exome alignment and germline variant detection

https://github.com/genome/cancer-genomics-workflow.git

Path: germline_exome_workflow.cwl

Branch/Commit ID: toil_compatibility
workflow graph vecscreen_and_filter_workflow.cwl

https://github.com/sapojnik/av_screen_x.git

Path: progs/vecscreen_and_filter_workflow.cwl

Branch/Commit ID: main
workflow graph magicblast-alignment-pe

This workflow aligns the fastq files using magicblast for paired-end samples

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Alignments/magicblast-alignment.cwl

Branch/Commit ID: master
workflow graph wf.cwl#main

https://github.com/damonge/md_share.git

Path: wf.cwl

Branch/Commit ID: master

Packed ID: main
workflow graph qiime2 create feature visual summaries

FeatureTable and FeatureData summaries from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-deblur.cwl

Branch/Commit ID: qiime2-workflow

Packed ID: qiime2-04-features.cwl
workflow graph mug_refinement.cwl

https://github.com/bioexcel/virtualscreening.git

Path: cwl/mug_refinement.cwl

Branch/Commit ID: master
workflow graph textures.cwl

Create emblem textures

 https://gitlab.com/unduthegun/stellaris-emblem-lab.git

Path: textures/textures.cwl

Branch/Commit ID: master