Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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ST520116.cwl
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https://github.com/Marco-Salvi/cwl-test.git
Path: wf5201/ST520116.cwl Branch/Commit ID: main |
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wgs alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_wgs_gvcf.cwl Branch/Commit ID: master |
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count-lines11-extra-step-wf-noET.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/count-lines11-extra-step-wf-noET.cwl Branch/Commit ID: main |
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tt_kmer_top_n.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_top_n.cwl Branch/Commit ID: test |
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Chunked version of phmmer-v3.2.cwl
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https://github.com/mscheremetjew/workflow-is-cwl.git
Path: workflows/phmmer-v3.2-chunked-wf.cwl Branch/Commit ID: assembly |
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pcawg_minibam_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/icgc-tcga-pancancer/pcawg-minibam.git
Path: pcawg_minibam_wf.cwl Branch/Commit ID: 1.0.0 |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: f914942 |
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tt_kmer_compare_wnode
Pairwise comparison |
https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_compare_wnode.cwl Branch/Commit ID: master |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/16S_functional_analysis.cwl Branch/Commit ID: caea457 |
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adapter for sequence_align_and_tag
Some workflow engines won't stage files in our nested structure, so parse it out here |
https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: downsample_and_recall |
