Explore Workflows
View already parsed workflows here or click here to add your own
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bwa_index
Modified from https://github.com/kids-first/kf-somatic-workflow/blob/master/sub_workflows/prepare_reference.cwl |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bwa_index.cwl Branch/Commit ID: 1.0.6 |
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Telescope Calibration
This workflow performs telescope calibrations and provides camera calibrations, psfs and optical throughputs. |
https://gitlab.cta-observatory.org/cta-computing/dpps/dpps-workflows.git
Path: workflows/calibpipe/TelescopeCalibrations/uc-cp-200.cwl Branch/Commit ID: main |
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preprocessor_for_oxog.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/icgc-tcga-pancancer/pcawg-oxog-filter.git
Path: preprocessor_for_oxog.cwl Branch/Commit ID: develop |
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kmer_cache_retrieve
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: test |
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EMG pipeline v3.0 (single end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: c1f8b22 |
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kfdrc_star_diploid_wf.cwl
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https://github.com/kids-first/kf-rnaseq-workflow.git
Path: workflow/kfdrc_star_diploid_wf.cwl Branch/Commit ID: master |
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cram_to_bam workflow
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: low-vaf |
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preprocessor_for_oxog.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git
Path: preprocessor_for_oxog.cwl Branch/Commit ID: master |
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functional analysis prediction with InterProScan
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/functional_analysis.cwl Branch/Commit ID: 5e82174 |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: 5e82174 |
