Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph EMG assembly for paired end Illumina

https://github.com/farahzkhan/ebi-metagenomics-cwl.git

Path: workflows/emg-assembly.cwl

Branch/Commit ID: master
workflow graph bgzip and index VCF

https://github.com/genome/cancer-genomics-workflow.git

Path: varscan/bgzip_and_index.cwl

Branch/Commit ID: toil_compatibility
workflow graph presto.cwl

https://github.com/eosc-lofar/presto-cwl.git

Path: presto.cwl

Branch/Commit ID: master
workflow graph preprocessor_for_oxog.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git

Path: preprocessor_for_oxog.cwl

Branch/Commit ID: master
workflow graph Execute CRISPR

https://github.com/ncbi/pgap.git

Path: bacterial_mobile_elem/wf_bacterial_mobile_elem.cwl

Branch/Commit ID: dev
workflow graph methylCtools_multilib.cwl

https://github.com/ifishlin/Benchmarking_CWL.git

Path: workflows/methylCtools/methylCtools_multilib.cwl

Branch/Commit ID: main
workflow graph seqprep-subwf.cwl

https://github.com/EBI-Metagenomics/pipeline-v5.git

Path: workflows/subworkflows/seqprep-subwf.cwl

Branch/Commit ID: master
workflow graph bam_collapsing.cwl

https://github.com/msk-access/bam_collapsing.git

Path: bam_collapsing.cwl

Branch/Commit ID: master
workflow graph pipeline-se-blacklist-removal.cwl

ATAC-seq pipeline - reads: SE - with blacklist removal

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/pipeline-se-blacklist-removal.cwl

Branch/Commit ID: master
workflow graph WGSSomaticMultiCallers_1_4_0.cwl

https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git

Path: janis_pipelines/wgs_somatic/cwl/WGSSomaticMultiCallers_1_4_0.cwl

Branch/Commit ID: master