Explore Workflows
View already parsed workflows here or click here to add your own
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fp_filter workflow
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/fp_filter.cwl Branch/Commit ID: No_filters_detect_variants |
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wf_get_peaks_scatter_se.cwl
The \"main\" workflow. Takes fastq files generated using the seCLIP protocol (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5991800/) and outputs candidate RBP binding regions (peaks). runs: wf_get_peaks_se.cwl through scatter across multiple samples. |
https://github.com/YeoLab/eclip.git
Path: cwl/wf_get_peaks_scatter_se.cwl Branch/Commit ID: master |
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Downsample and HaplotypeCaller
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/downsample_and_recall.cwl Branch/Commit ID: downsample_and_recall |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git
Path: zip_and_index_vcf.cwl Branch/Commit ID: develop |
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rRNA_selection.cwl
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: 5dc7c5c |
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rnaseq-pe-dutp.cwl
Runs RNA-Seq BioWardrobe basic analysis with strand specific pair-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/rnaseq-pe-dutp.cwl Branch/Commit ID: master |
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transform.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/dnaseq/transform.cwl Branch/Commit ID: 1.0 |
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EMG assembly for paired end Illumina
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: 56dafa4 |
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beagle-imputation-per-region.cwl
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https://github.com/ddbj/imputation-server-wf.git
Path: Workflows/beagle-imputation-per-region.cwl Branch/Commit ID: main |
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main.cwl
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https://github.com/alpha-unito/cwl-1000genome-workflow.git
Path: main.cwl Branch/Commit ID: master |
