Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	align_and_count_multiple_report.cwl	https://github.com/common-workflow-lab/wdl-cwl-translator.git Path: wdl2cwl/tests/cwl_files/align_and_count_multiple_report.cwl Branch/Commit ID: 0a8c54b014101112fa4a2cb5fce5c30133691cae
	env-wf1.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/env-wf1.cwl Branch/Commit ID: 1e5ad10c6b0d1c5f531737d12ef64062a00baef2
	scatter-valuefrom-wf5.cwl	https://github.com/common-workflow-language/cwl-v1.1.git Path: tests/scatter-valuefrom-wf5.cwl Branch/Commit ID: b1d4a69df86350059bd49aa127c02be0c349f7de
	allele-alignreads-se-pe.cwl Workflow maps FASTQ files from `fastq_files` input into reference genome `reference_star_indices_folder` and insilico generated `insilico_star_indices_folder` genome (concatenated genome for both `strain1` and `strain2` strains). For both genomes STAR is run with `outFilterMultimapNmax` parameter set to 1 to discard all of the multimapped reads. For insilico genome SAM file is generated. Then it's splitted into two SAM files based on strain names and then sorted by coordinates into the BAM format. For reference genome output BAM file from STAR slignment is also coordinate sorted.	https://github.com/datirium/workflows.git Path: subworkflows/allele-alignreads-se-pe.cwl Branch/Commit ID: 942f453603bc1df04cee28d6ac6b3b8b649fda55
	count-lines5-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines5-wf.cwl Branch/Commit ID: 7dec97bb8f0bc2d9e9eb710faf41f2e98cc7cdda
	kmer_top_n_extract	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: 8af4e2aabf43d5e3c7162efae4ad4649df5601e2
	Prepare user input Prepare user input for NCBI-PGAP pipeline	https://github.com/ncbi/pgap.git Path: prepare_user_input2.cwl Branch/Commit ID: 8af4e2aabf43d5e3c7162efae4ad4649df5601e2
	kmer_ref_compare_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_ref_compare_wnode.cwl Branch/Commit ID: 8af4e2aabf43d5e3c7162efae4ad4649df5601e2
	scatter-wf4.cwl#main	https://github.com/common-workflow-language/cwl-v1.1.git Path: tests/scatter-wf4.cwl Branch/Commit ID: 664835e83eb5e57eee18a04ce7b05fb9d70d77b7 Packed ID: main
	js_output_workflow.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/js_output_workflow.cwl Branch/Commit ID: 55ccde7c2fe3e7899136ce8606a341e292d7050a