Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	gathered exome alignment and somatic variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/gathered_somatic_exome.cwl Branch/Commit ID: 5cb188131f786ed33156e2f0e3dd63ab9c04245d
	trimmed_fastq Quality Control and Raw Data trimming	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/trimmed_fastq.cwl Branch/Commit ID: e1fd26587a78afc376c10bf6db36abd2c840768e
	env-wf3.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/env-wf3.cwl Branch/Commit ID: 7ec307b01442936fad9b1149f4500496557505ff
	Subworkflow that runs cnvkit in single sample mode and returns a vcf file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 051074fce4afd9732ef34db9dd43d3a1d8e979d6
	io-int-default-wf.cwl	https://github.com/common-workflow-language/cwl-v1.1.git Path: tests/io-int-default-wf.cwl Branch/Commit ID: e515226f8ac0f7985cd94dae4a301150adae3050
	count-lines5-wf.cwl	https://github.com/common-workflow-language/cwl-v1.2.git Path: tests/count-lines5-wf.cwl Branch/Commit ID: e62f99dd79d6cb9c157cceb458f74200da84f6e9
	varscan somatic workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 7b4b489474473c3d2d992a838b89632c2b97dc2c
	bam to trimmed fastqs and biscuit alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: 4bc0a4577d626b65a4b44683e5a1ab2f7d7faf4c
	blastp_wnode_naming	https://github.com/ncbi/pgap.git Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: 8af4e2aabf43d5e3c7162efae4ad4649df5601e2
	checkm_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_checkm_wnode.cwl Branch/Commit ID: 8af4e2aabf43d5e3c7162efae4ad4649df5601e2