Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	wf-alignment.cwl	https://github.com/bcbio/test_bcbio_cwl.git Path: somatic/somatic-workflow/wf-alignment.cwl Branch/Commit ID: master
	collapsed_fastq_to_bam.cwl	https://github.com/mskcc/ACCESS-Pipeline.git Path: workflows/marianas/collapsed_fastq_to_bam.cwl Branch/Commit ID: master
	LSU-from-tablehits.cwl	https://github.com/farahzkhan/ebi-metagenomics-cwl.git Path: tools/LSU-from-tablehits.cwl Branch/Commit ID: master
	bwa_mem	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/subworkflows/bwa_mem.cwl Branch/Commit ID: 1.0.5
	Quality assessment, amplicon classification and functional prediction Workflow for quality assessment of paired reads and classification using NGTax 2.0 and functional annotation using picrust2. In addition files are exported to their respective subfolders for easier data management in a later stage. Steps: - FastQC (read quality control) - NGTax 2.0 - Picrust 2 - Export module for ngtax	https://git.wur.nl/unlock/cwl.git Path: cwl/workflows/workflow_ngtax_picrust2.cwl Branch/Commit ID: master
	Long-covid.cwl	https://github.com/cwlviewer-test/Long-covid---aedea650-7a21-11ed-b9d2-e51f21933d80.git Path: Long-covid---9c236c30-7a21-11ed-b9d2-e51f21933d80/Long-covid.cwl Branch/Commit ID: read-potential-cases-disc
	intersect_intervals.cwl	https://github.com/wtsi-hgi/arvados-pipelines.git Path: cwl/workflows/intersect_intervals.cwl Branch/Commit ID: master
	validate_interleaved_fq.cwl	https://github.com/cancerit/workflow-seq-import.git Path: cwls/validate_interleaved_fq.cwl Branch/Commit ID: 0.5.0_test
	bwa_mem	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/abstract_operations/subworkflows/bwa_mem.cwl Branch/Commit ID: master
	fp_filter workflow	https://github.com/ChrisMaherLab/PACT.git Path: subworkflows/fp_filter.cwl Branch/Commit ID: master

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