Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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sc_atac_seq_initial_analysis.cwl
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https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git
Path: sc-atac-seq-pipeline/steps/sc_atac_seq_initial_analysis.cwl Branch/Commit ID: ff6c5c7 |
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scRNA-seq pipeline using Salmon and Alevin
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: pipeline.cwl Branch/Commit ID: baee233 |
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kallisto-demo.cwl
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https://github.com/alexbarrera/GGR-cwl.git
Path: workflows/workflows/kallisto-demo.cwl Branch/Commit ID: master |
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bact_get_kmer_reference
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https://github.com/ncbi/pgap.git
Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: dev |
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directory.cwl
Inspect provided directory and return filenames. Generate a new directory and return it (including content). |
https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/directory.cwl Branch/Commit ID: main |
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filter-pcr-artifacts.cwl
DNase-seq - map - Filter PCR Artifacts |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/map/filter-pcr-artifacts.cwl Branch/Commit ID: master |
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collate_unique_SSU_headers.cwl
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 9c57dba |
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Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/pipelines/pvacseq.cwl Branch/Commit ID: No_filters_detect_variants |
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qiime2 demux sequences
Demultiplexing sequences from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/bespin-workflows/16s-qiime2.git
Path: subworkflows/qiime2-02-demux-emp-single.cwl Branch/Commit ID: develop |
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rnaseq-pe.cwl
Runs RNA-Seq BioWardrobe basic analysis with pair-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/rnaseq-pe.cwl Branch/Commit ID: master |
