Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Exome QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_exome_no_verify_bam.cwl Branch/Commit ID: e2a34d2b8c406db9aed8e49e8bdcf36f51444379
	umi per-lane alignment subworkflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: c235dc6d623879a6c4f5fb307f545c9806eb2d23
	Report generation workflow	https://github.com/arvados/arvados-tutorial.git Path: WGS-processing/cwl/helper/report-wf.cwl Branch/Commit ID: c1a36dfcadbbdc8fc3b7c7732cb2dff895a4e8ee
	exome alignment and somatic variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: 8dc462a7d9ba1479f764682af99c69d8574cb3dc
	heatmap-prepare.cwl Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order.	https://github.com/Barski-lab/workflows.git Path: tools/heatmap-prepare.cwl Branch/Commit ID: dcf683418d101917852b1711a91af817d4ea5d03
	Per-chromosome pindel	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: a3e26136043c03192c38c335316d2d36e3e67478
	umi molecular alignment workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/molecular_alignment.cwl Branch/Commit ID: 3bebaf9b70331de9f4845e2223c55082f5a812fb
	count-lines1-wf.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/count-lines1-wf.cwl Branch/Commit ID: 4fd45edb9531a03223c18a586e32d0baf0d5acb2
	heatmap-prepare.cwl Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order.	https://github.com/datirium/workflows.git Path: tools/heatmap-prepare.cwl Branch/Commit ID: 730b40bc403263b724399a952c0f3e2d28f13519
	gcaccess_from_list	https://github.com/ncbi/pgap.git Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: 8af4e2aabf43d5e3c7162efae4ad4649df5601e2