Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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EMG assembly for paired end Illumina
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: 0cd2d70 |
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canine_vcfmerger2_module.cwl
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https://github.com/d3b-center/canine-dev.git
Path: subworkflows/canine_vcfmerger2_module.cwl Branch/Commit ID: master |
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pz_workflow.cwl
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https://github.com/EiffL/descpipe-cwl.git
Path: workflows/pz_workflow.cwl Branch/Commit ID: master |
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collate_unique_SSU_headers.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 3168316 |
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multi-psf.cwl
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https://github.com/gijzelaerr/spiel.git
Path: multi-psf.cwl Branch/Commit ID: master |
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wf_vecscreen.cwl
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https://github.com/ncbi/pipelines.git
Path: contam_filter/wf_vecscreen.cwl Branch/Commit ID: master |
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module-2.cwl
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https://github.com/mskcc/Innovation-Pipeline.git
Path: workflows/module-2.cwl Branch/Commit ID: master |
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find_hotspots_in_normals.cwl
Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups |
https://github.com/mskcc/access-pipeline.git
Path: workflows/subworkflows/find_hotspots_in_normals.cwl Branch/Commit ID: master |
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rnaseq-alignment-circRNA-multiple-samples
This workflow aligns multiple samples using STAR for paired-end samples to be used in circRNA pipeline |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/Alignments/star-alignment-circRNA-multiple-samples-default.cwl Branch/Commit ID: master |
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cnv_gridss
CNV GRIDSS calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/cnv_gridss.cwl Branch/Commit ID: 1.0.9 |
