Explore Workflows
View already parsed workflows here or click here to add your own
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rnaseq-pe.cwl
Runs RNA-Seq BioWardrobe basic analysis with pair-end data file. |
Path: workflows/rnaseq-pe.cwl Branch/Commit ID: master |
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Varscan Workflow
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Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: downsample_and_recall |
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functional analysis prediction with InterProScan
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Path: workflows/functional_analysis.cwl Branch/Commit ID: 0cd2d70 |
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Short read alignment pipeline
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Path: alignment-pipeline.cwl Branch/Commit ID: master |
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rhapsody_pipeline_2.0.cwl#VDJ_GatherCalls.cwl
VDJ_GatherCalls collect the outputs from the multi-processed VDJ step into one file. |
Path: rhapsody_pipeline_2.0.cwl Branch/Commit ID: main Packed ID: VDJ_GatherCalls.cwl |
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joint genotyping for trios or small cohorts
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Path: definitions/subworkflows/joint_genotype.cwl Branch/Commit ID: master |
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samtools_view_sam2bam
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Path: structuralvariants/cwl/subworkflows/samtools_view_sam2bam.cwl Branch/Commit ID: 1.0.7 |
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MACE ChIP-exo peak caller workflow for single-end samples
This workflow execute peak caller and QC from ChIP-exo for single-end samples using MACE |
Path: workflows/ChIP-exo/peak-caller-MACE-SE.cwl Branch/Commit ID: master |
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collate_unique_SSU_headers.cwl
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Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 3f85843 |
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vg_basic_workflow.cwl
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Path: 2018_matsue_biohackathon/vg_basic_workflow.cwl Branch/Commit ID: master |
