Explore Workflows

https://github.com/bespin-workflows/exomeseq-gatk4.git

Path: subworkflows/exomeseq-gatk4-03-organizedirectories.cwl

Branch/Commit ID: v2.0.3

https://github.com/UoMResearchIT/wrf_emep_cwl_linear_workflow.git

Path: workflows/wrf_workflow.cwl

Branch/Commit ID: develop

This workflow is intended to be used to test the QC module, without having to run the long waltz step

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/QC/qc_workflow_wo_waltz.cwl

Branch/Commit ID: master

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl

Branch/Commit ID: master

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines16-wf.cwl

Branch/Commit ID: master

Animal Genome Assembly pipeline by Kazuharu Arakawa (@gaou_ak), CWLized by Tazro Ohta (@inutano). This workflow contains assembly step by canu which may take a few weeks to complete. Be careful to run!

https://github.com/pitagora-network/DAT2-cwl.git

Path: workflow/animal-genome-assembly/animal-genome-assembly.with_canu.cwl

Branch/Commit ID: main

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines11-extra-step-wf-noET.cwl

Branch/Commit ID: main

https://github.com/azzaea/tsts.git

Path: cwl/host_workflow.cwl

Branch/Commit ID: master

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/emg-assembly.cwl

Branch/Commit ID: master

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome_cle_gathered.cwl

Branch/Commit ID: master