Explore Workflows
View already parsed workflows here or click here to add your own
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 71d9c83 |
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wf_C3_C4_map_present_NA_MOD.cwl
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Path: yw_cwl_modeling/yw2cwl_parser/example_sql/C3_C4_map_present_NA_MOD/wf_C3_C4_map_present_NA_MOD.cwl Branch/Commit ID: master |
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hi-c-processing-pairs-nonorm.cwl
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Path: cwl_awsem_v1/hi-c-processing-pairs-nonorm.cwl Branch/Commit ID: dev2 |
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exome alignment and germline variant detection, with optitype for HLA typing
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Path: definitions/pipelines/germline_exome_hla_typing.cwl Branch/Commit ID: low-vaf |
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Functional analyis of sequences that match the 16S SSU
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Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: master |
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Merge, annotate, and generate a TSV for SVs
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Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: downsample_and_recall |
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wf_full_IDR_pipeline_2inputs.cwl
The main workflow that: produces two reproducible peaks via IDR given two eCLIP samples (1 input, 1 IP each). runs the 'rescue ratio' statistic runs the 'consistency ratio' statistic |
Path: cwl/wf_full_IDR_pipeline_2inputs.cwl Branch/Commit ID: master |
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mutect parallel workflow
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Path: definitions/subworkflows/mutect.cwl Branch/Commit ID: master |
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rnaseq-pt1.cwl
Star/HTSeq RNA Seq Pipeline |
Path: workflows/rnaseq-pt1.cwl Branch/Commit ID: master |
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wf_rescue_ratio_2inputs.cwl
Calculates the rescue ratio (see Gabe's protocols paper), given two eCLIP IP samples and 2 size-matched input samples. Also returns the reproducible peaks given these two samples. This is different from the 1input workflow in that each INPUT is first merged together and is used downstream instead of the 1input version, which remains unmodified. Merged inputs are NOT used in calculating true reproducible peaks. |
Path: cwl/wf_rescue_ratio_2inputs.cwl Branch/Commit ID: master |
