Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph pipeline.cwl

https://github.com/hubmapconsortium/ome-tiff-pyramid.git

Path: pipeline.cwl

Branch/Commit ID: b1b40c4
workflow graph Raw sequence data to BQSR

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/sequence_to_bqsr.cwl

Branch/Commit ID: downsample_and_recall
workflow graph Uses Bruker TopSpin to convert a zipped NMR data directory to JCAMP-DX

https://github.com/NFDI4Chem/formaTAPIRest.git

Path: cwl/zipped2bruker2jcamp.cwl

Branch/Commit ID: main
workflow graph varscanW.cwl

Author: AMBARISH KUMAR er.ambarish@gmail.com; ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using VARSCAN. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence.

https://github.com/ambarishK/bio-cwl-tools.git

Path: varscanW.cwl

Branch/Commit ID: release
workflow graph bqsr_workflow.cwl

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/BQSR/bqsr_workflow.cwl

Branch/Commit ID: master
workflow graph Initial CNVkit analysis

https://github.com/ChrisMaherLab/PACT.git

Path: subworkflows/cnvkit_initial_analysis.cwl

Branch/Commit ID: master
workflow graph wf-loadContents3.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/wf-loadContents3.cwl

Branch/Commit ID: master
workflow graph qiime2 demux sequences

Demultiplexing sequences from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step1-import-demux.cwl

Branch/Commit ID: qiime2-workflow

Packed ID: qiime2-02-demux.cwl
workflow graph Single-cell RNA-Seq Aggregate

Single-cell RNA-Seq Aggregate Aggregates gene expression data from multiple Single-cell RNA-Seq Alignment experiments.

 https://github.com/Barski-lab/sc-seq-analysis.git

Path: workflows/sc-rna-aggregate-wf.cwl

Branch/Commit ID: main
workflow graph revcomp_with_rename.cwl

https://github.com/puentesdiaz/workflows.git

Path: workflows/sanbi_cwltutorial/revcomp/revcomp_with_rename.cwl

Branch/Commit ID: master