Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph md_launch.cwl

https://github.com/douglowe/biobb_hpc_cwl_md_list.git

Path: md_launch.cwl

Branch/Commit ID: main
workflow graph trimmed_fastq

Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed)

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl

Branch/Commit ID: master
workflow graph post-correct-dir.cwl

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/post-correct-dir.cwl

Branch/Commit ID: master
workflow graph macs2.cwl

string

 https://github.com/pitagora-network/DAT2-cwl.git

Path: workflow/epigenome-chip-seq/macs2/macs2.cwl

Branch/Commit ID: main
workflow graph sorter.cwl

https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git

Path: steps/sorter.cwl

Branch/Commit ID: master
workflow graph joint genotyping for trios or small cohorts

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/joint_genotype.cwl

Branch/Commit ID: low-vaf
workflow graph GRO_run_nested.cwl

https://github.com/JFRudzinski/CWL_example.git

Path: test_workflow_notables_clean/nested_workflow/GRO_run_nested.cwl

Branch/Commit ID: master
workflow graph 03-map-se-blacklist-removal.cwl

ATAC-seq 03 mapping - reads: SE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/03-map-se-blacklist-removal.cwl

Branch/Commit ID: v1.0.0
workflow graph Raw sequence data to BQSR

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/sequence_to_bqsr.cwl

Branch/Commit ID: master
workflow graph rna-seq-pipeline.cwl

https://github.com/sbg/sbg_dockstore_tools.git

Path: gtex-rnaseq-pipeline/rna-seq-pipeline.cwl

Branch/Commit ID: master