Explore Workflows

https://github.com/rawgene/cwl.git

Path: workflows/hisat2_cufflink_cuffmerge_cuffquant_ballgown.cuffdiffs.cwl

Branch/Commit ID: master

Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed)

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/trimmed_fastq.cwl

Branch/Commit ID: 1.0.7

https://github.com/dockstore/hello_world.git

Path: hello_world.cwl

Branch/Commit ID: 1.03

run multiple rw stages sequentially using earlier step output as later stage input_bam

https://github.com/sentieon/sentieon-cwl.git

Path: stage/rw-flow.cwl

Branch/Commit ID: master

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v4-paired.cwl

Branch/Commit ID: master

Taxonomic analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

https://github.com/bespin-workflows/16s-qiime2.git

Path: subworkflows/qiime2-08-taxonomic-analysis.cwl

Branch/Commit ID: develop

https://github.com/rawgene/cwl.git

Path: workflows/hisat2_samtools_htseq-dexseq.stringtie-prepDE-DESeq2.cwl

Branch/Commit ID: master

https://github.com/kyusque/abmp_log_dump2pieda.git

Path: test-extract_fraginfo.cwl

Branch/Commit ID: master

https://github.com/EiffL/metacal-pipeline.git

Path: tools/meds-wf.cwl

Branch/Commit ID: master

This demonstrates how to wrap a \"real\" tool with a checker workflow that runs both the tool and a tool that performs verification of results

https://github.com/dockstore-testing/md5sum-checker.git

Path: checker-workflow-wrapping-tool.cwl

Branch/Commit ID: master