Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph SVision-Pro workflow for structural variant detection in cancer samples

A workflow that uses SVision-Pro to identify structural variants in tumor/normal paired samples from Oxford Nanopore Technology (ONT) long-read sequencing data.

https://github.com/bio-ontology-research-group/crc.git

Path: workflow/main.cwl

Branch/Commit ID: main
workflow graph EMG pipeline v3.0 (draft CWL version)

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3.cwl

Branch/Commit ID: 708fd97
workflow graph CRAM_md5sum.cwl

https://github.com/DataBiosphere/topmed-workflows.git

Path: CRAM-no-header-md5sum/md5sum/CRAM_md5sum.cwl

Branch/Commit ID: 1.19.0
workflow graph workflow.cwl

https://github.com/Andreja28/cloud-workflows.git

Path: cwl/baghdadite/deconv/workflow.cwl

Branch/Commit ID: master
workflow graph compile1.cwl#main

https://github.com/YangYang-Lcos/legacy.git

Path: workflows/compile/compile1.cwl

Branch/Commit ID: master

Packed ID: main
workflow graph fusion_workflow.cwl

Fusion workflow, runs STARFusion and Arriba

 https://github.com/BD2KGenomics/dockstore_workflow_fusion.git

Path: fusion_workflow.cwl

Branch/Commit ID: master
workflow graph gvcf-distr.cwl

https://github.com/sentieon/sentieon-cwl.git

Path: stage/gvcf-distr.cwl

Branch/Commit ID: master
workflow graph ST520113.cwl

https://github.com/Marco-Salvi/cwl-ro-crate.git

Path: ST520113.cwl

Branch/Commit ID: main
workflow graph chksum_xam_to_interleaved_fq.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_xam_to_interleaved_fq.cwl

Branch/Commit ID: master
workflow graph Workflow that executes the Sounder SIPS end-to-end L1b processing

Requires valid AWS credentials as input arguments

 https://github.com/unity-sds/unity-sps-workflows.git

Path: sounder_sips/ssips_L1b_workflow.cwl

Branch/Commit ID: main