Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph wf_get_peaks_scatter_se.cwl

The \"main\" workflow. Takes fastq files generated using the seCLIP protocol (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5991800/) and outputs candidate RBP binding regions (peaks). runs: wf_get_peaks_se.cwl through scatter across multiple samples.

https://github.com/YeoLab/eclip.git

Path: cwl/wf_get_peaks_scatter_se.cwl

Branch/Commit ID: master
workflow graph atac_encode_sample.cwl

https://github.com/ngs-mstb/micgent.git

Path: python/lib/MICGENT/data/cwl/atac_encode_sample.cwl

Branch/Commit ID: master
workflow graph umi duplex alignment fastq workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_umi_duplex.cwl

Branch/Commit ID: master
workflow graph Chipseq alignment for mouse with qc and creating homer tag directory

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/chipseq_alignment_mouse.cwl

Branch/Commit ID: downsample_and_recall
workflow graph Chipseq alignment with qc and creating homer tag directory

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/chipseq.cwl

Branch/Commit ID: master
workflow graph workflow.cwl

https://github.com/NAL-i5K/Organism_Onboarding.git

Path: flow_create_genomics-workspace_yml/flow_create_yml/workflow.cwl

Branch/Commit ID: master
workflow graph RNASelector as a CWL workflow

https://doi.org/10.1007/s12275-011-1213-z

 https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/rna-selector.cwl

Branch/Commit ID: f914942
workflow graph step-valuefrom4-wf.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/step-valuefrom4-wf.cwl

Branch/Commit ID: master
workflow graph birds.cwl

https://github.com/eosc-lofar/presto-cwl.git

Path: birds.cwl

Branch/Commit ID: visualise
workflow graph fail-wf.cwl

Run failtool which will fail

 https://github.com/Duke-GCB/calrissian.git

Path: input-data/fail-wf.cwl

Branch/Commit ID: master