Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
pipeline-fastq2vcf.cwl
DNAseq pipeline from fastq to vcf |
https://github.com/Sentieon/Sentieon-cwl.git
Path: pipeline/pipeline-fastq2vcf.cwl Branch/Commit ID: master |
|
|
|
Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)
|
https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: master |
|
|
|
record-in-secondaryFiles-wf.cwl
|
https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/record-in-secondaryFiles-wf.cwl Branch/Commit ID: main |
|
|
|
RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: f993cad |
|
|
|
star_samtools_featurecounts_edger.cwl
|
https://github.com/rawgene/cwl.git
Path: workflows/star_samtools_featurecounts_edger.cwl Branch/Commit ID: master |
|
|
|
pipeline.cwl
|
https://github.com/hubmapconsortium/ome-tiff-pyramid.git
Path: pipeline.cwl Branch/Commit ID: 8c65f17 |
|
|
|
RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: 0cd2d70 |
|
|
|
EMG pipeline v3.0 (paired end version)
|
https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: 5833078 |
|
|
|
cmsearch-multimodel.cwl
|
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/cmsearch-multimodel.cwl Branch/Commit ID: d4e5e53 |
|
|
|
qa_check_subwf.cwl
This subworkflow will perform a QA check on the OxoG outputs. It will perform the QA check on a single tumour and it associated VCFs |
https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git
Path: qa_check_subwf.cwl Branch/Commit ID: 1.0.0 |
