Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Unaligned BAM to BQSR and VCF

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl

Branch/Commit ID: downsample_and_recall
workflow graph scatter_head.cwl

https://github.com/giannisdoukas/CWLJNIKernel.git

Path: tests/cwl/scatter_head.cwl

Branch/Commit ID: master
workflow graph Functional analyis of sequences that match the 16S SSU

https://github.com/farahzkhan/ebi-metagenomics-cwl.git

Path: workflows/16S_taxonomic_analysis.cwl

Branch/Commit ID: master
workflow graph QIIME2 Step 2 (DADA2 option)

QIIME2 DADA2, feature summaries, phylogenetic diversity tree, taxonomic analysis and ancom

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2-paired.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: main
workflow graph count-lines9-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines9-wf.cwl

Branch/Commit ID: 8d19cdb9209f08afe04e4ce1a9a20f3769e59e0a
workflow graph wgs alignment and germline variant detection

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/germline_wgs_gvcf.cwl

Branch/Commit ID: low-vaf
workflow graph rhapsody_targeted_1.9-beta.cwl#VDJ_Annotate_Reads.cwl

https://github.com/longbow0/cwl.git

Path: v1.9-beta/rhapsody_targeted_1.9-beta.cwl

Branch/Commit ID: master

Packed ID: VDJ_Annotate_Reads.cwl
workflow graph ST520113.cwl

https://github.com/Marco-Salvi/cwl-test.git

Path: wf5201/ST520113.cwl

Branch/Commit ID: main
workflow graph call_variants.cwl

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/subworkflows/call_variants.cwl

Branch/Commit ID: master
workflow graph Immunotherapy Workflow

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/immuno.cwl

Branch/Commit ID: downsample_and_recall