Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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umi molecular alignment workflow
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/molecular_alignment.cwl Branch/Commit ID: No_filters_detect_variants |
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germline-gpu-v4.2.1.cwl
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https://github.com/NCGM-genome/WGSpipeline.git
Path: Workflows/germline-gpu-v4.2.1.cwl Branch/Commit ID: main |
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rna annotation
RNAs - predict, cluster, identify, annotate |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/rna-annotation.workflow.cwl Branch/Commit ID: master |
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foreign_screening.cwl
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https://github.com/ncbi/pgap.git
Path: vecscreen/foreign_screening.cwl Branch/Commit ID: test |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: 5dc7c5c |
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Varscan Workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: master |
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qiime2 explore sample taxonomic composition
Taxonomic analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2-paired.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-08-taxonomic-analysis.cwl |
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phase VCF
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/phase_vcf.cwl Branch/Commit ID: downsample_and_recall |
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trimmed_fastq
Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed) |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/trimmed_fastq.cwl Branch/Commit ID: 1.0.6 |
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stat222.cwl
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https://github.com/hamid58b/cancer-genomics-workflow.git
Path: boa/stat222.cwl Branch/Commit ID: master |
