Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph ValidateCameraPlateScale

Validate camera plate scale

 https://github.com/gammasim/workflows.git

Path: workflows/ValidateCameraPlateScale.cwl

Branch/Commit ID: e0525b01ebee3ac1b4f0128a0002c6543a5918cf
workflow graph BAM to BEDPE

Comvert BAM to BEDPE and compress the output

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/File-formats/bamtobedpe-gzip.cwl

Branch/Commit ID: 590ed6c9803ba670411c48650bc24deef7863925
workflow graph Subworkflow to allow calling cnvkit with cram instead of bam files

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cram_to_cnvkit.cwl

Branch/Commit ID: e509210450e4c62aecb99a228fc97f0eae2d9580
workflow graph taxcheck.cwl

Perform taxonomic identification tasks on an input genome

https://github.com/ncbi/pgap.git

Path: taxcheck.cwl

Branch/Commit ID: 6d5e27ee7c01effb14c40619df9c4f6d321a25bf
workflow graph kmer_cache_retrieve

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_cache_retrieve.cwl

Branch/Commit ID: f3bc91cf1320f75967ec2719b1506b75f23cb4b6
workflow graph conditional_step_no_inputs.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/conditional_step_no_inputs.cwl

Branch/Commit ID: 9cda157cb4380e9d30dec29f0452c56d0c10d064
workflow graph workflow_input_sf_expr_v1_1.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/workflow_input_sf_expr_v1_1.cwl

Branch/Commit ID: ebd041f35a1179668e9a7490249d651a6cc034b7
workflow graph STAR-Alignment-PE

This workflow aligns the fastq files using STAR for no spliced genomes

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Alignments/star-alignment-nosplice.cwl

Branch/Commit ID: 590ed6c9803ba670411c48650bc24deef7863925
workflow graph wffail.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/wffail.cwl

Branch/Commit ID: 1397d96ad97fe8abfd1184675d728a8a04699d67
workflow graph kmer_ref_compare_wnode

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_ref_compare_wnode.cwl

Branch/Commit ID: 861d9baa067af98d794ba0ed4e43aa42e37d8a24