Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)

https://github.com/ncbi/pgap.git

Path: bacterial_annot/wf_orf_hmms.cwl

Branch/Commit ID: 68311dd5328bf6b782a370a0253b41062a3359a3
workflow graph STAR-Alignment-PE-circRNA

This workflow aligns the fastq files using STAR for paired-end samples to be used in circRNA pipeline

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Alignments/star-alignment-circRNA.cwl

Branch/Commit ID: 590ed6c9803ba670411c48650bc24deef7863925
workflow graph vecscreen.cwl

https://github.com/ncbi/pgap.git

Path: vecscreen/vecscreen.cwl

Branch/Commit ID: 8c21035bff3cbffccf5682bd0357a6d71f3bdb81
workflow graph mixed_library_metrics.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/mixed_library_metrics.cwl

Branch/Commit ID: 1046947f8d2923e6563b3aceac9e435554c5bea1
workflow graph SPRM pipeline

https://github.com/hubmapconsortium/sprm.git

Path: pipeline.cwl

Branch/Commit ID: c81c4a105eabafaa153d2fdace5a573bb2b642ed
workflow graph Bacterial Annotation, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)

https://github.com/ncbi/pgap.git

Path: bacterial_annot/wf_bacterial_annot_2nd_pass.cwl

Branch/Commit ID: 68311dd5328bf6b782a370a0253b41062a3359a3
workflow graph scatter-wf3_v1_2.cwl#main

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/scatter-wf3_v1_2.cwl

Branch/Commit ID: ebd041f35a1179668e9a7490249d651a6cc034b7

Packed ID: main
workflow graph PGAP Pipeline

PGAP pipeline for external usage, powered via containers

 https://github.com/ncbi/pgap.git

Path: wf_common.cwl

Branch/Commit ID: 68311dd5328bf6b782a370a0253b41062a3359a3
workflow graph 811-12.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/811-12.cwl

Branch/Commit ID: 1bf74499ca1c4a5f98e7cffb0ad4aa89aa98cb9e
workflow graph step_valuefrom5_wf_v1_2.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/step_valuefrom5_wf_v1_2.cwl

Branch/Commit ID: 4a8390d897913c3776a0d2b2a01e1e6134b968bc