Explore Workflows

Simple 2 step workflow to check that workflow steps are independently picking up on the number of processes. First run the parallel get PIDs step (on the input num procs) then run (on a single proc) the line count. This should equal the input.

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/mpi_simple_wf.cwl

Branch/Commit ID: 67aa64a089cfc50e9999ccdf550dfdae631a946e

For CMRxRecon validation

https://github.com/CmrxRecon/CMRxRecon2024-snippets.git

Path: workflow-task1.cwl

Branch/Commit ID: 71bfacc9b005e0fd3359fcc8b466dd898a53940c

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/workflow_input_format_expr_v1_2.cwl

Branch/Commit ID: b9de3783981045be450b58bd420fadda7d7c81a0

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl

Branch/Commit ID: a28a8077a8c4dbf117d16799807483a2532af3f3

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/step-valuefrom3-wf_v1_2.cwl

Branch/Commit ID: b9de3783981045be450b58bd420fadda7d7c81a0

This workflow detect and remove contamination from a DNA fasta file

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Contamination/contaminant-cleanup.cwl

Branch/Commit ID: 590ed6c9803ba670411c48650bc24deef7863925

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/1st-workflow.cwl

Branch/Commit ID: 011c3dde1b27bcd8e9fab6204be9a98cd6cbf534

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_gc_extract_wnode.cwl

Branch/Commit ID: 466a62729c20256c2f962d247ffaf2e782a0a023

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/map-ordering-v1_1.cwl

Branch/Commit ID: 88ad2a6ad70d7124b094e0cb3e5f72b78078c7e2

https://github.com/mscheremetjew/workflow-is-cwl.git

Path: workflows/phmmer-v3.2-chunked-wf.cwl

Branch/Commit ID: 004e4c3d24ddc63159dfb78577bdc0c90818de8d