Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: ca6ca613 |
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02-trim-pe.cwl
ChIP-seq 02 trimming - reads: PE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/02-trim-pe.cwl Branch/Commit ID: master |
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platanusB-w-rRNA.cwl
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https://github.com/nigyta/bact_genome.git
Path: cwl/workflow/platanusB-w-rRNA.cwl Branch/Commit ID: master |
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Quality assessment, amplicon classification
Workflow for quality assessment of paired reads and classification using NGTax 2.0. In addition files are exported to their respective subfolders for easier data management in a later stage. Steps: - FastQC (read quality control) - NGTax 2.0 - Export module |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_ngtax.cwl Branch/Commit ID: master |
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status_postgres_workflow.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/status/status_postgres_workflow.cwl Branch/Commit ID: 1.0 |
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Detect Docm variants
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/docm_cle.cwl Branch/Commit ID: downsample_and_recall |
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WES GATK4 Preprocessing
Whole Exome Sequence analysis GATK4 Preprocessing |
https://github.com/duke-gcb/bespin-cwl.git
Path: workflows/exomeseq-gatk4-preprocessing.cwl Branch/Commit ID: master |
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Varscan Workflow
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https://github.com/litd/analysis-workflows.git
Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: master |
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Varscan Workflow
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: No_filters_detect_variants |
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salmon_wf_pe.cwl
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https://github.com/pitagora-network/pitagora-cwl.git
Path: workflows/salmon/paired_end/salmon_wf_pe.cwl Branch/Commit ID: master |
