Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Tumor-Only Detect Variants workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: a670f323e77e02d9b77be9a13d73d5276dd3676c
	count-lines2-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines2-wf.cwl Branch/Commit ID: a858bb4db58ef2df17b4856294ad7904643c5c6e
	alignment_novoalign.cwl	https://github.com/uc-cdis/genomel_pipelines.git Path: genomel/cwl/workflows/harmonization/alignment_novoalign.cwl Branch/Commit ID: 91e222adeeee0bd567a5bf2385400610fad0d3a9
	Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: a7838a5ca72b25db5c2af20a15f34303a839980e
	Bisulfite alignment and QC	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: 5c49c5a53259d4c88a02750f1a16a3c02d711115
	kmer_top_n	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_top_n.cwl Branch/Commit ID: 89098668413e90519c99b35143bffec509d3599c
	exome alignment and germline variant detection, with optitype for HLA typing	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_exome_hla_typing.cwl Branch/Commit ID: aba52e94b6d7470132d3c092c26d67e29d615300
	Bisulfite alignment and QC	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: 040a3d1a719736d7fce6db83702d3fb7f9d69eac
	exome alignment with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/exome_alignment.cwl Branch/Commit ID: 195b4ab487c939eb32a55d9f78bc1befd100caae
	ani_top_n	https://github.com/ncbi/pgap.git Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: 803f6367d1b279a7b6dc1a4e8ae43f1bbec9f760