Explore Workflows

https://github.com/heliumdatacommons/TOPMed_RNAseq_CWL.git

Path: workflow/checker-workflows/rnaseq_pipeline_fastq_checker.cwl

Branch/Commit ID: master

https://github.com/mr-c/cwltests.git

Path: cwl/workflow_select_shape.cwl

Branch/Commit ID: pack_test

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3.cwl

Branch/Commit ID: a8abd0e

https://github.com/lanl/BEE.git

Path: examples/clamr-ffmpeg-build/clamr_wf.cwl

Branch/Commit ID: develop

Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open reference otus and assigns taxa using greengenes. The output are taxa plots.

https://github.com/MG-RAST/qiime-pipeline.git

Path: CWL/Workflows/qiime/OPENrefcluster2plot.cwl

Branch/Commit ID: master

For a given Zenodo community, retrieve a list of all its downloadable files

https://github.com/stain/ro-index-paper.git

Path: code/data-gathering/workflows/zenodo-community-links.cwl

Branch/Commit ID: master

https://github.com/DimitraPanou/scRNAseq-cwl.git

Path: subworkflows/steps.cwl

Branch/Commit ID: 4e9c15b

ATAC-seq 04 quantification - PE

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/04-peakcall-pe.cwl

Branch/Commit ID: master

https://github.com/cancerit/cgpRna.git

Path: cwls/infuse_pipeline.cwl

Branch/Commit ID: feature/test_for_cwlviewer

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/scatter-wf4.cwl

Branch/Commit ID: master

Packed ID: main