Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	umi molecular alignment workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/molecular_qc.cwl Branch/Commit ID: adcae308fdccaa1190083616118dfadb4df65dca
	xenbase-sra-to-fastq-se.cwl	https://github.com/datirium/workflows.git Path: subworkflows/xenbase-sra-to-fastq-se.cwl Branch/Commit ID: e433136aecc9447bce63ad1363a67a8a356fd13c
	Chipseq alignment for nonhuman with qc and creating homer tag directory	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/chipseq_alignment_nonhuman.cwl Branch/Commit ID: 35e6b3ef71b4a2a9caba1dbd5dc424a8809bcc0a
	kfdrc_cram_reheader_wf.cwl	https://github.com/kids-first/kf-alignment-workflow.git Path: workflows/kfdrc_cram_reheader_wf.cwl Branch/Commit ID: 7a7d6a943b504690341efad2c2ff5fea5d9afd0d
	ChIP-Seq pipeline single-read ChIP-Seq basic analysis workflow for a single-read experiment.	https://github.com/datirium/workflows.git Path: workflows/chipseq-se.cwl Branch/Commit ID: 3ceeb2e90f49579369b2e10485908516348381a9
	trick_revsort.cwl Reverse the lines in a document, then sort those lines.	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/trick_revsort.cwl Branch/Commit ID: 1397d96ad97fe8abfd1184675d728a8a04699d67
	umi molecular alignment fastq workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/umi_molecular_alignment.cwl Branch/Commit ID: 0c4855bf23622828413ecb09dd30754691c28014
	Super-enhancer post ChIP-Seq analysis Super-enhancers, consist of clusters of enhancers that are densely occupied by the master regulators and Mediator. Super-enhancers differ from typical enhancers in size, transcription factor density and content, ability to activate transcription, and sensitivity to perturbation. Use to create stitched enhancers, and to separate super-enhancers from typical enhancers using sequencing data (.bam) given a file of previously identified constituent enhancers (.gff)	https://github.com/datirium/workflows.git Path: workflows/super-enhancer.cwl Branch/Commit ID: 4f48ee6f8665a34cdf96e89c012ee807f80c7a3d
	Bisulfite alignment and QC	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: 788bdc99c1d5b6ee7c431c3c011eb30d385c1370
	Immunotherapy Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/immuno.cwl Branch/Commit ID: 3bebaf9b70331de9f4845e2223c55082f5a812fb