Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: 54c5074587af001a44eccb4762a4cb25fa24cb3e
	somatic_exome: exome alignment and somatic variant detection somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: ef7f3345b352319ec22dffba26c79df033b141f9
	count-lines6-wf.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/count-lines6-wf.cwl Branch/Commit ID: 17695244222b0301b37cb749fe4a8d89622cd1ad
	rnaseq-header.cwl	https://github.com/datirium/workflows.git Path: metadata/rnaseq-header.cwl Branch/Commit ID: 60854b5d299df91e135e05d02f4be61f6a310fbc
	extract_gencoll_ids	https://github.com/ncbi/pgap.git Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: d87a0786b52809b36201adb7d3d3ab2b8bbbef20
	gathered exome alignment and somatic variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/gathered_somatic_exome.cwl Branch/Commit ID: 49508a2757ff2f49f1c200774a38af1c12b531bf
	mutect panel-of-normals workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/panel_of_normals.cwl Branch/Commit ID: 449bc7e45bb02316d040f73838ef18359e770268
	gathered exome alignment and somatic variant detection for cle purpose	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/gathered_cle_somatic_exome.cwl Branch/Commit ID: ddd748516b25256a461ea9277303406fa2759b00
	mut2.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/mut2.cwl Branch/Commit ID: 78fe9d41ee5a44f8725dfbd7028e4a5ee42949cf
	hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather	https://github.com/ncbi/pgap.git Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: c6e7e18969c761803c38762ad6ee91b0001c52e2