Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	exome alignment and somatic variant detection for cle purpose	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome_cle.cwl Branch/Commit ID: 28d1065759cbd389594ee33b41fd1103ced5436d
	bam to trimmed fastqs and HISAT alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 4ae14dd3a447c90022e3dfeb53fc05b8436e2775
	waltz_workflow_all_bams.cwl	https://github.com/mskcc/ACCESS-Pipeline.git Path: workflows/waltz/waltz_workflow_all_bams.cwl Branch/Commit ID: 7caafba5ad2213d0c429e57684f287fa3feb6de7
	Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_orf_hmms.cwl Branch/Commit ID: a1f39f21670be28427ceb91ceaeb9339545c18fc
	align_merge_sas	https://github.com/ncbi/pgap.git Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: 48381989cb983567ed936fde632714933df65350
	count-lines10-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines10-wf.cwl Branch/Commit ID: e414985ecf9a371c5834e76cdb12ef9619893276
	checkm_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_checkm_wnode.cwl Branch/Commit ID: 008a090fb1938fbb393494ac8fcb219f0d9f5295
	HS Metrics workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: 9ad798f18104eb4a9c6c118f42691b9f5d9efd19
	wffail.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/wffail.cwl Branch/Commit ID: f6aeeae01ca1d821f2be1966f48f5257100f90e5
	bacterial_orthology_cond	https://github.com/ncbi/pgap.git Path: bacterial_orthology/wf_bacterial_orthology_conditional.cwl Branch/Commit ID: d40ef1462a4c210be3184609dbb3467ff61fc017